PDBsum entry 4j2b

Tunnel analysis for: 4j2b calculated with

MOLE 2.0

PDB id

4j2b

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

5 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.33

1.35

36.6

-1.61

-0.50

20.9

78

4

4

1

5

2

0

0

ATP 1001 A CA 1002 A CA 1005 A

2

1.33

1.35

49.1

-1.17

-0.26

16.8

82

4

3

4

8

3

0

0

ATP 1001 A CA 1003 A DT 115 P

3

1.34

1.34

62.0

-0.48

-0.19

12.2

83

2

3

2

8

3

0

0

ATP 1001 A CA 1002 A CA 1003 A DG 110 P DC 111 P
DT 112 P DT 113 P DA 114 P DT 115 P DT 1 T DT 4 T
DA 5 T DT 6 T

4

1.09

1.37

34.4

-1.66

-0.31

18.2

78

5

2

5

3

5

1

0

5

1.35

1.49

16.8

-1.74

-0.15

10.8

76

1

2

1

0

2

0

0

6

1.35

1.49

18.2

-1.93

-0.16

13.6

68

2

1

1

0

2

0

0

7

1.11

2.53

31.3

0.78

0.39

10.0

81

2

1

0

8

1

1

0

8

1.21

1.71

15.5

0.51

0.29

12.7

83

2

2

0

6

2

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.