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PDBsum entry 4f4z
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Tunnel analysis for: 4f4z calculated with  MOLE 2.0
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PDB id
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4f4z
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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16 tunnels,
coloured by tunnel radius |
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16 tunnels,
coloured by
tunnel radius
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16 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.31 |
1.31 |
25.0 |
0.47 |
0.37 |
11.3 |
90 |
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1 |
1 |
1 |
3 |
1 |
0 |
0 |
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DA 9 P DG 10 P DC 5 T DC 9 T DT 10 T
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2 |
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1.29 |
1.29 |
26.0 |
-2.10 |
-0.15 |
30.1 |
87 |
3 |
1 |
2 |
1 |
1 |
0 |
0 |
DG 5 P DG 7 P DA 8 P DA 9 P DC 9 T DT 10 T DT 11
T DC 12 T
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3 |
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1.48 |
1.64 |
26.2 |
-0.25 |
-0.08 |
15.9 |
83 |
2 |
2 |
0 |
4 |
1 |
0 |
0 |
DG 13 C DG 7 D DG 8 D
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4 |
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1.31 |
1.31 |
27.9 |
-1.29 |
-0.38 |
17.8 |
90 |
3 |
0 |
2 |
1 |
1 |
0 |
0 |
DG 6 P DG 7 P DA 8 P DA 9 P DC 9 T DT 10 T
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5 |
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1.48 |
1.64 |
30.9 |
-0.53 |
-0.10 |
15.8 |
79 |
4 |
1 |
0 |
6 |
1 |
1 |
0 |
DG 13 C DG 7 D DG 8 D
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6 |
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1.48 |
1.60 |
31.5 |
-0.17 |
-0.02 |
11.8 |
92 |
3 |
0 |
2 |
8 |
1 |
0 |
0 |
DG 13 C DG 7 D DG 8 D DC 9 D
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7 |
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1.48 |
1.60 |
32.6 |
-0.72 |
-0.23 |
13.4 |
88 |
2 |
1 |
3 |
6 |
1 |
0 |
0 |
DG 13 C DG 7 D DG 8 D DC 9 D
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8 |
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1.49 |
1.62 |
33.6 |
-0.59 |
-0.48 |
11.2 |
88 |
3 |
1 |
1 |
5 |
1 |
0 |
0 |
DC 12 C DG 13 C DG 7 D DG 8 D DC 9 D DT 10 D DT
11 D
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9 |
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1.46 |
1.47 |
34.4 |
-0.54 |
-0.41 |
12.9 |
85 |
4 |
3 |
1 |
4 |
1 |
0 |
0 |
CA 402 B DC 12 C DG 13 C DG 7 D DG 8 D DC 9 D
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10 |
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1.49 |
1.61 |
35.6 |
-0.45 |
-0.25 |
8.7 |
77 |
3 |
2 |
1 |
4 |
4 |
0 |
0 |
DC 12 C DG 13 C DG 7 D DG 8 D DC 9 D DT 10 D DT
11 D DC 12 D
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11 |
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1.50 |
1.64 |
42.8 |
-0.40 |
-0.51 |
8.1 |
86 |
3 |
0 |
1 |
4 |
1 |
0 |
0 |
DA 9 C DG 10 C DC 11 C DC 12 C DG 13 C DG 7 D DG
8 D DC 9 D DT 10 D DT 11 D DC 12 D DC 13 D DC 14 D
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12 |
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1.50 |
1.63 |
48.9 |
-0.22 |
-0.48 |
6.2 |
87 |
2 |
0 |
1 |
4 |
1 |
0 |
0 |
DG 7 C DA 8 C DA 9 C DG 10 C DC 11 C DC 12 C DG
13 C DG 7 D DG 8 D DC 9 D DT 10 D DT 11 D DC 12 D
DC 13 D DC 14 D DC 15 D
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13 |
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1.49 |
1.65 |
49.6 |
-0.11 |
-0.04 |
12.7 |
75 |
4 |
2 |
0 |
6 |
3 |
1 |
0 |
DG 13 C DG 7 D DG 8 D
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14 |
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1.50 |
1.67 |
53.0 |
-0.95 |
0.00 |
13.8 |
74 |
5 |
3 |
1 |
5 |
5 |
3 |
0 |
DG 13 C DG 7 D DG 8 D
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15 |
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1.48 |
1.67 |
56.1 |
0.02 |
0.17 |
11.0 |
78 |
4 |
2 |
3 |
9 |
3 |
2 |
0 |
DG 13 C DG 7 D DG 8 D
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16 |
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1.41 |
1.73 |
17.2 |
-0.99 |
-0.30 |
14.7 |
84 |
2 |
0 |
2 |
2 |
0 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program