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PDBsum entry 4dts

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Top Page protein dna_rna ligands metals pores links
Pore analysis for: 4dts calculated with MOLE 2.0 PDB id
4dts
Pores calculated on whole structure Pores calculated excluding ligands

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5 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.79 2.18 32.9 -1.74 -0.22 30.2 82 7 4 2 6 1 0 0  DCP 1001 A
2 2.84 2.84 41.2 0.11 0.00 8.6 84 3 1 3 5 2 0 0  DT 112 P DT 113 P DA 114 P DT 1 T DG 3 T DG 5 T
DT 6 T DA 8 T
3 1.79 2.13 50.0 -1.14 -0.24 22.4 82 5 4 2 6 1 0 0  DCP 1001 A DT 112 P DT 113 P DA 114 P DOC 115 P
DT 1 T DG 3 T DG 5 T DT 6 T DA 8 T
4 1.46 1.58 50.6 -0.94 -0.45 10.0 83 5 0 3 1 2 1 0  DG 103 P DT 109 P DG 110 P DC 111 P DT 6 T DA 8 T
DA 11 T DG 12 T DT 13 T
5 1.98 2.18 53.0 -1.33 -0.24 16.1 82 3 3 2 3 1 0 0  DC 2 T DG 3 T DG 5 T DT 6 T DA 8 T

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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