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PDBsum entry 4dts

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Top Page protein dna_rna ligands metals tunnels links
Tunnel analysis for: 4dts calculated with MOLE 2.0 PDB id
4dts
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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1 tunnel, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.31 1.51 28.1 -1.66 -0.71 19.8 86 5 1 1 0 0 0 0  DG 103 P DT 113 P DA 8 T DG 9 T DC 10 T DA 11 T
DG 12 T
2 1.29 1.29 44.2 -1.36 -0.57 14.2 80 5 0 2 0 1 1 0  DT 109 P DG 110 P DT 113 P DA 8 T DG 9 T DC 10 T
DA 11 T DG 12 T
3 1.29 1.29 45.9 -1.59 -0.63 18.1 85 5 0 2 0 0 1 0  DA 107 P DC 108 P DT 109 P DG 110 P DT 113 P DA 8
T DG 9 T DC 10 T DA 11 T DG 12 T DT 13 T DC 14 T
DC 15 T
4 1.81 1.93 15.3 -0.32 0.14 13.3 77 3 1 2 1 3 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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