 |
PDBsum entry 4dts
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 4dts calculated with MOLE 2.0
|
PDB id
|
|
|
|
4dts
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Tunnels calculated on whole structure |
 |
Tunnels calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
1 tunnel,
coloured by tunnel radius |
 |
4 tunnels,
coloured by
tunnel radius
|
4 tunnels,
coloured as in list below
|
|
|
 |
 |
 |
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.31 |
1.51 |
28.1 |
-1.66 |
-0.71 |
19.8 |
86 |
 |
5 |
1 |
1 |
0 |
0 |
0 |
0 |
 |
DG 103 P DT 113 P DA 8 T DG 9 T DC 10 T DA 11 T DG 12 T
|
 |
 |
2 |
 |
1.29 |
1.29 |
44.2 |
-1.36 |
-0.57 |
14.2 |
80 |
5 |
0 |
2 |
0 |
1 |
1 |
0 |
DT 109 P DG 110 P DT 113 P DA 8 T DG 9 T DC 10 T DA 11 T DG 12 T
|
 |
3 |
 |
1.29 |
1.29 |
45.9 |
-1.59 |
-0.63 |
18.1 |
85 |
5 |
0 |
2 |
0 |
0 |
1 |
0 |
DA 107 P DC 108 P DT 109 P DG 110 P DT 113 P DA 8 T DG 9 T DC 10 T DA 11 T DG 12 T DT 13 T DC 14 T DC 15 T
|
 |
4 |
 |
1.81 |
1.93 |
15.3 |
-0.32 |
0.14 |
13.3 |
77 |
3 |
1 |
2 |
1 |
3 |
0 |
0 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |