PDBsum entry 4d25 Go to PDB code:  Tunnel analysis for: 4d25 calculated with MOLE 2.0 PDB id 4d25 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 1.42 26.4 -0.78 -0.26 12.2 85 2 2 2 1 3 0 0  ANP 1564 A MG 1565 A 2 1.28 1.40 27.8 -0.62 -0.10 12.8 80 3 2 2 1 4 0 0  ANP 1564 A MG 1565 A 3 1.28 1.40 34.3 -2.15 -0.73 25.1 80 4 4 3 0 3 0 0  ANP 1564 A MG 1565 A 4 1.28 1.41 37.6 -2.22 -0.72 18.7 80 3 3 4 0 3 1 0  ANP 1564 A MG 1565 A 5 1.53 1.71 18.3 -1.16 -0.44 17.1 79 2 2 1 2 0 1 1  U 1 D G 2 D A 3 D GOL 1007 D 6 1.09 1.09 27.3 -0.53 -0.30 12.1 75 1 2 0 3 1 1 1  G 2 D A 3 D GOL 1007 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.