spacer
spacer

PDBsum entry 4cn3

Go to PDB code: 
Top Page protein dna_rna metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 4cn3 calculated with MOLE 2.0 PDB id
4cn3
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.16 1.53 19.7 -2.69 -0.79 21.9 83 3 2 3 0 0 0 0  
2 1.15 1.15 23.9 -2.88 -0.27 33.6 75 5 1 0 0 1 0 0  DA 9 G DA 10 G DG 11 G DT 12 G DT 13 G DC 14 G DG
4 H
3 1.18 1.51 25.1 -2.32 -0.74 21.0 83 4 2 3 1 0 0 0  DA 12 H

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer