PDBsum entry 4c4k

Tunnel analysis for: 4c4k calculated with

MOLE 2.0

PDB id

4c4k

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.15

1.65

18.7

0.18

-0.18

7.9

79

1

1

0

4

1

1

0

2

1.14

1.55

20.3

0.11

-0.13

9.6

80

1

2

0

5

1

1

0

3

1.14

1.35

20.7

0.27

-0.18

6.3

81

1

1

0

3

1

1

0

4

1.13

1.44

22.4

0.23

-0.16

6.6

83

1

2

0

4

1

1

0

5

1.19

1.60

24.7

0.12

-0.13

7.6

90

1

0

1

7

1

1

0

6

1.19

1.59

26.3

0.07

-0.11

8.2

89

1

1

1

8

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.