PDBsum entry 4bqb Go to PDB code:  Pore analysis for: 4bqb calculated with MOLE 2.0 PDB id 4bqb Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   25 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.65 1.65 35.7 0.01 -0.03 13.8 81 7 0 5 7 2 2 0   2 1.20 1.68 37.1 -1.04 -0.58 12.9 89 4 3 1 5 2 0 0   3 1.70 1.69 37.3 -0.87 -0.10 18.9 84 6 3 6 4 1 2 0   4 2.48 2.65 40.5 -2.30 -0.77 18.6 90 4 3 4 1 0 0 0  NAG 2084 B NAG 2084 C 5 1.63 1.64 41.5 -1.20 -0.32 21.0 82 5 4 7 7 1 2 0   6 2.91 2.89 43.3 -1.61 -0.38 21.1 79 7 3 4 5 3 1 0  NAG 2084 A 7 1.67 1.83 45.3 -1.79 -0.51 19.1 85 5 4 7 3 3 1 0  NAG 2084 A NAG 2086 D 8 2.90 2.90 45.4 -1.25 -0.27 25.0 82 6 5 6 10 0 2 0   9 2.75 2.91 45.9 -1.61 -0.36 22.8 79 8 4 4 5 3 1 0  NAG 2084 A 10 1.62 1.63 47.0 -0.79 -0.11 21.1 85 6 2 6 7 1 2 0   11 1.62 1.63 48.6 0.04 0.09 16.5 82 6 2 5 10 1 2 0   12 2.32 2.96 49.1 -1.67 -0.23 22.8 85 7 4 4 3 2 1 0  NAG 2084 C 13 2.33 3.01 51.0 -0.07 0.10 18.6 83 7 4 5 13 0 2 0   14 1.76 1.76 52.3 0.14 0.11 16.1 83 9 2 6 14 1 2 0   15 1.73 1.73 53.2 -0.11 0.05 17.7 84 9 4 6 12 1 2 0   16 1.66 1.68 53.6 -1.51 -0.26 22.8 82 9 2 5 3 4 1 0  NAG 2084 A 17 2.18 2.93 54.4 -0.46 -0.04 19.9 84 7 7 5 13 0 2 0   18 1.81 1.81 56.2 -1.54 -0.16 22.7 86 8 3 4 4 3 1 0  NAG 2084 C 19 1.67 1.83 58.5 -1.54 -0.54 21.5 85 3 7 3 4 2 2 0   20 1.77 1.77 65.6 -0.67 -0.03 19.4 82 12 2 4 9 4 1 0  NAG 2084 A 21 2.22 2.76 66.8 -0.93 -0.07 21.2 82 10 5 3 10 3 1 0  NAG 2084 A 22 1.23 1.67 67.1 -1.11 -0.26 16.8 88 8 4 4 7 4 1 0   23 1.64 1.64 70.3 -0.87 -0.02 21.3 85 10 3 3 10 3 1 0  NAG 2084 C 24 2.93 2.91 75.0 -0.76 0.01 21.5 85 11 5 5 14 2 1 0  NAG 2084 C 25 2.95 2.95 75.9 -0.91 -0.05 22.3 85 11 8 4 13 2 1 0  NAG 2084 C 26 1.24 1.48 81.1 -0.59 -0.10 16.6 87 10 4 3 13 4 1 0   27 1.23 1.51 85.9 -0.58 -0.08 17.7 86 11 6 4 18 3 1 0   28 1.24 1.73 86.8 -0.65 -0.10 18.3 87 11 8 4 16 3 1 0  NAG 2084 B 29 3.53 3.57 88.3 -1.24 -0.08 23.1 84 14 5 2 10 5 0 0  NAG 2084 A NAG 2084 C 30 1.22 1.52 99.1 -0.97 -0.15 19.3 85 14 6 2 13 6 0 0  NAG 2084 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.