PDBsum entry 4bdm Go to PDB code:  Tunnel analysis for: 4bdm calculated with MOLE 2.0 PDB id 4bdm Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.71 2.32 26.2 -0.67 -0.44 5.5 82 4 0 2 5 0 2 0   2 1.72 2.29 32.7 -0.68 -0.39 7.4 81 3 0 2 5 1 2 0   3 1.27 2.08 47.2 -0.65 -0.36 14.6 82 6 5 1 5 1 2 0   4 1.31 1.98 55.1 -0.52 -0.17 14.0 79 4 3 3 7 4 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.