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PDBsum entry 4am3

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Top Page protein dna_rna ligands Protein-protein interface(s) pores links
Pore analysis for: 4am3 calculated with MOLE 2.0 PDB id
4am3
Pores calculated on whole structure Pores calculated excluding ligands

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20 pores, coloured by radius 15 pores, coloured by radius 15 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.71 2.95 32.5 -1.92 -0.61 26.4 78 5 6 1 0 1 0 0  
2 3.88 3.88 37.6 -1.92 -0.59 25.5 81 3 5 2 0 3 0 0  C 4 E U 5 E U 6 E
3 2.71 2.92 48.1 -1.73 -0.36 27.0 78 7 7 1 3 2 1 0  
4 2.82 3.09 60.9 -0.94 -0.28 21.0 83 3 9 1 7 0 1 1  
5 1.54 1.67 64.9 -1.10 -0.52 16.8 79 3 6 1 1 2 2 0  
6 1.83 2.04 76.2 -1.77 -0.61 22.3 84 9 6 3 1 2 0 0  U 1 D G 9 E U 1 I
7 3.39 4.04 79.1 -2.18 -0.25 29.4 81 13 0 2 1 3 2 0  U 1 D U 1 I
8 1.38 1.92 79.9 -1.43 -0.39 21.2 83 10 4 2 3 3 2 0  U 1 D G 8 E G 9 E
9 1.44 1.80 80.8 -1.66 -0.46 23.9 83 11 4 2 2 3 0 0  U 1 D G 8 E G 9 E U 1 I
10 1.88 2.07 82.5 -1.94 -0.60 23.9 84 9 6 3 1 2 1 0  G 9 E U 1 I
11 2.04 2.03 83.5 -1.89 -0.38 27.0 81 14 3 1 2 4 0 0  U 1 D U 1 I
12 2.13 2.14 93.6 -2.14 -0.40 28.6 82 15 3 2 2 4 1 0  U 1 D U 1 I
13 1.80 2.01 104.8 -1.63 -0.54 23.0 82 12 10 2 3 4 0 0  G 9 E U 1 I
14 1.88 2.08 120.6 -1.66 -0.25 25.8 80 18 9 2 6 7 1 0  U 6 E U 1 I
15 1.22 3.34 157.3 -1.32 -0.30 22.8 78 22 9 2 11 6 1 0  PO4 1621 B U 1 D U 1 I

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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