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PDBsum entry 4g1f

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protein ligands Protein-protein interface(s) links
Hydrolase/hydrolase inhibitor PDB id
4g1f

 

 

 

 

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Contents
Protein chain
724 a.a.
Ligands
NAG-NAG ×5
0WG ×4
NAG ×12
Waters ×391
PDB id:
4g1f
Name: Hydrolase/hydrolase inhibitor
Title: Crystal structure of human dipeptidyl peptidase iv in complex with a pyridopyrimidinedione analogue
Structure: Dipeptidyl peptidase 4. Chain: a, b, c, d. Fragment: unp residues 39-766. Synonym: adabp, adenosine deaminase complexing protein 2, adcp-2, dipeptidyl peptidase iv, dpp iv, t-cell activation antigen cd26, tp103, dipeptidyl peptidase 4 membrane form, dipeptidyl peptidase iv membrane form, dipeptidyl peptidase 4 soluble form, dipeptidyl peptidase iv soluble form. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: adcp2, cd26, dpp4. Expressed in: spodoptera frugiperda. Expression_system_taxid: 7108
Resolution:
2.90Å     R-factor:   0.209     R-free:   0.259
Authors: R.J.Skene,S.L.Gwaltney
Key ref: B.Lam et al. (2012). Structure-based design of pyridopyrimidinediones as dipeptidyl peptidase IV inhibitors. Bioorg Med Chem Lett, 22, 6628-6631. PubMed id: 23025999
Date:
10-Jul-12     Release date:   27-Feb-13    
PROCHECK
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 Headers
 References

Protein chains
Pfam   ArchSchema ?
P27487  (DPP4_HUMAN) -  Dipeptidyl peptidase 4 from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
766 a.a.
724 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.3.4.14.5  - dipeptidyl-peptidase Iv.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: Release of an N-terminal dipeptide, Xaa-Xbb-|-Xcc, from a polypeptide, preferentially when Xbb is Pro, provided Xcc is neither Pro nor hydroxyproline.

 

 
Bioorg Med Chem Lett 22:6628-6631 (2012)
PubMed id: 23025999  
 
 
Structure-based design of pyridopyrimidinediones as dipeptidyl peptidase IV inhibitors.
B.Lam, Z.Zhang, J.A.Stafford, R.J.Skene, L.Shi, S.L.Gwaltney.
 
  ABSTRACT  
 
Dipeptidyl peptidase IV (DPP-4) inhibitors have been shown to enhance GLP-1 levels and thereby improve hyperglycemia in type II diabetes. From a small fragment hit, using structure-based design, we have discovered a new class of non-covalent, potent and selective DPP-4 inhibitors.
 

 

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