PDBsum entry 3zyj Go to PDB code:  Pore analysis for: 3zyj calculated with MOLE 2.0 PDB id 3zyj Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   11 pores, coloured by radius 11 pores, coloured by radius 11 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.73 1.87 30.7 0.00 -0.38 5.5 99 1 1 3 5 0 0 0   2 1.73 1.73 48.0 -1.12 -0.20 18.1 77 6 5 3 4 4 1 0   3 1.68 1.82 59.3 -0.90 -0.19 17.3 88 7 4 4 5 3 0 0   4 1.33 1.35 67.2 1.14 0.52 4.9 77 1 1 3 13 4 0 1   5 1.79 2.09 69.9 -1.04 -0.40 12.6 93 3 3 9 5 1 1 0   6 1.18 1.26 70.0 -1.70 -0.26 11.1 83 4 2 6 2 2 3 1   7 1.82 2.09 27.3 -0.97 -0.17 14.6 88 5 2 1 2 1 0 0   8 1.86 1.86 27.5 -2.32 -0.29 28.0 77 5 5 1 2 2 1 0   9 1.78 1.77 39.3 -0.90 -0.13 19.4 85 7 3 6 5 2 0 0   10 1.70 1.91 56.5 -1.05 -0.15 18.8 83 9 5 2 7 3 0 0   11 1.70 1.91 56.9 -1.56 -0.18 23.6 77 9 7 2 7 4 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.