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PDBsum entry 3wfs
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Pore analysis for: 3wfs calculated with  MOLE 2.0
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PDB id
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3wfs
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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28 pores,
coloured by radius |
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28 pores,
coloured by radius
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28 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.74 |
1.74 |
25.1 |
-1.03 |
-0.82 |
11.4 |
82 |
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1 |
2 |
1 |
0 |
0 |
0 |
0 |
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G 6 B G 7 B A 14 B G 15 B U 16 B G 19 B G 22 B U
59 B U 60 B C 61 B
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2 |
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1.98 |
1.98 |
25.3 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
C 11 A G 24 A C 25 A A 26 A C 27 A U 28 A G 30 A
A 38 A U 39 A C 40 A C 41 A A 42 A G 43 A G 44 A
U 45 A UNK 5 D UNK 6 D UNK 7 D
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3 |
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1.74 |
1.74 |
32.1 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 7 B G 15 B U 16 B G 19 B U 20 B G 22 B U 47 B G
49 B G 50 B C 51 B G 52 B A 58 B U 59 B U 60 B C
61 B
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4 |
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2.94 |
2.94 |
33.0 |
-1.74 |
-0.77 |
20.7 |
80 |
3 |
3 |
1 |
0 |
0 |
0 |
0 |
A 14 B G 15 B U 16 B U 17 B G 18 B C 61 B UNK 481
D
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5 |
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2.70 |
3.03 |
33.8 |
-2.02 |
-0.85 |
25.8 |
83 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 5 A G 6 A C 11 A U 12 A C 13 A G 15 A U 16 A U
68 A G 69 A UNK 5 D UNK 6 D UNK 7 D
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6 |
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2.35 |
2.49 |
34.8 |
-1.93 |
-0.71 |
22.6 |
75 |
3 |
3 |
0 |
0 |
0 |
1 |
0 |
G 1 B A 5 B G 6 B U 12 B C 13 B U 68 B G 69 B G
70 B
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7 |
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2.34 |
2.48 |
36.1 |
-1.79 |
-0.69 |
20.1 |
70 |
1 |
4 |
0 |
0 |
1 |
2 |
0 |
G 1 B C 11 B U 12 B C 25 B U 68 B G 69 B G 70 B
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8 |
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2.79 |
2.79 |
36.5 |
-1.50 |
-0.86 |
19.2 |
81 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
C 3 A C 4 A A 5 A G 6 A G 15 A U 16 A C 61 A C 62
A G 63 A C 64 A
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9 |
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2.72 |
2.72 |
37.3 |
-0.56 |
-0.81 |
5.7 |
80 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
C 3 A C 4 A A 5 A G 7 A U 47 A G 49 A G 50 A C 51
A G 52 A G 53 A A 58 A U 59 A U 60 A C 61 A C 62
A G 63 A C 64 A C 65 A
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10 |
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2.57 |
2.57 |
37.8 |
-1.20 |
-0.83 |
14.6 |
82 |
1 |
2 |
0 |
0 |
0 |
0 |
0 |
G 6 A G 7 A G 15 A U 16 A U 47 A G 49 A G 50 A C
51 A G 52 A G 53 A G 57 A A 58 A U 59 A U 60 A C
61 A
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11 |
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2.79 |
2.79 |
39.8 |
-1.46 |
-0.84 |
14.8 |
79 |
2 |
3 |
1 |
0 |
0 |
0 |
0 |
G 6 B G 7 B A 14 B G 15 B U 16 B U 20 B U 47 B G
49 B G 50 B C 51 B G 52 B A 58 B U 59 B U 60 B C
61 B
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12 |
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1.73 |
1.73 |
40.7 |
-0.94 |
-0.78 |
10.6 |
77 |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
G 15 B U 16 B U 17 B G 18 B G 19 B G 22 B U 59 B
U 60 B C 61 B UNK 481 D
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13 |
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2.64 |
2.64 |
52.7 |
-2.00 |
-0.75 |
23.6 |
86 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 5 A G 6 A C 11 A U 12 A C 13 A G 15 A U 68 A G
69 A UNK 5 D UNK 6 D UNK 7 D
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14 |
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1.60 |
1.99 |
58.6 |
-2.02 |
-0.58 |
24.0 |
79 |
5 |
6 |
2 |
4 |
1 |
2 |
0 |
G 15 A U 16 A G 1 B U 68 B G 69 B G 70 B
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15 |
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2.58 |
2.58 |
58.7 |
-1.25 |
-0.83 |
15.3 |
85 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 5 A G 6 A G 7 A C 11 A U 12 A C 13 A G 15 A U
16 A U 47 A G 49 A G 50 A C 51 A G 52 A G 53 A A
58 A U 59 A U 60 A C 61 A U 68 A G 69 A UNK 5 D
UNK 6 D UNK 7 D
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16 |
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2.02 |
2.03 |
62.6 |
-1.75 |
-0.57 |
18.9 |
81 |
6 |
2 |
1 |
0 |
1 |
0 |
0 |
G 2 B C 3 B C 4 B A 5 B G 7 B U 20 B U 47 B G 49
B G 50 B C 51 B G 52 B A 58 B U 59 B U 60 B C 61
B C 62 B G 63 B C 64 B C 65 B
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17 |
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2.79 |
2.87 |
69.9 |
-0.92 |
-0.72 |
10.1 |
76 |
4 |
1 |
0 |
1 |
0 |
1 |
0 |
G 1 A G 2 A C 3 A C 4 A C 11 A U 12 A G 63 A C 64
A C 65 A C 66 A C 67 A U 68 A G 69 A G 70 A UNK 5
D UNK 6 D UNK 7 D
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18 |
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2.04 |
3.72 |
70.1 |
-1.04 |
-0.41 |
20.0 |
86 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 5 A G 6 A C 11 A U 12 A C 13 A U 68 A G 69 A G
70 A C 71 A G 1 B U 68 B G 69 B G 70 B UNK 5 D
UNK 6 D UNK 7 D
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19 |
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2.77 |
2.77 |
70.0 |
-1.38 |
-0.87 |
15.8 |
80 |
1 |
4 |
1 |
0 |
0 |
0 |
0 |
A 14 A G 15 A U 16 A U 17 A G 22 A A 23 A U 28 A
C 41 A A 42 A G 43 A G 44 A U 45 A
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20 |
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2.22 |
2.42 |
71.4 |
-1.82 |
-0.57 |
24.1 |
81 |
6 |
7 |
2 |
5 |
1 |
1 |
0 |
G 15 A U 16 A A 5 B G 6 B C 11 B U 12 B C 13 B C
25 B U 68 B G 69 B G 70 B
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21 |
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2.01 |
2.02 |
73.1 |
-2.11 |
-0.57 |
24.1 |
80 |
9 |
3 |
1 |
0 |
1 |
0 |
0 |
G 2 B C 3 B U 17 B G 18 B C 61 B C 62 B G 63 B C
64 B UNK 481 D
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22 |
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1.75 |
1.75 |
74.6 |
-1.64 |
-0.59 |
17.8 |
81 |
6 |
2 |
1 |
0 |
1 |
0 |
0 |
G 2 B C 3 B C 4 B A 5 B G 6 B G 7 B G 15 B U 16 B
G 19 B G 22 B U 59 B U 60 B C 61 B C 62 B G 63 B
C 64 B C 65 B
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23 |
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2.03 |
2.11 |
77.0 |
-1.80 |
-0.41 |
18.0 |
77 |
6 |
4 |
2 |
1 |
3 |
1 |
0 |
C 11 A G 24 A C 25 A A 26 A C 27 A U 28 A G 30 A
A 38 A U 39 A C 40 A C 41 A UNK 5 D UNK 6 D UNK 7
D SO4 1002 D
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24 |
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2.02 |
2.02 |
80.7 |
-1.95 |
-0.64 |
20.8 |
81 |
8 |
5 |
2 |
0 |
1 |
0 |
0 |
G 2 B C 3 B C 4 B A 5 B G 6 B G 7 B A 14 B G 15 B
U 16 B C 61 B C 62 B G 63 B C 64 B C 65 B
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25 |
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2.06 |
2.06 |
87.6 |
-1.81 |
-0.42 |
18.6 |
77 |
6 |
5 |
2 |
1 |
3 |
1 |
0 |
A 23 A G 24 A C 40 A C 41 A A 42 A G 43 A G 44 A
U 45 A SO4 1002 D
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26 |
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2.21 |
3.54 |
108.4 |
-1.53 |
-0.68 |
18.3 |
79 |
5 |
2 |
0 |
2 |
0 |
3 |
0 |
G 1 A G 2 A C 3 A C 4 A A 5 A G 6 A G 7 A U 47 A
G 49 A G 50 A C 51 A G 52 A G 53 A A 58 A U 59 A
U 60 A C 61 A C 62 A C 65 A C 66 A C 67 A U 68 A
G 69 A G 70 A C 71 A G 1 B U 68 B G 69 B G 70 B
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27 |
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2.36 |
2.36 |
29.2 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 10 B G 24 B C 25 B A 26 B C 27 B U 28 B G 29 B
A 38 B C 40 B C 41 B A 42 B G 43 B G 44 B U 45 B
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28 |
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2.43 |
2.43 |
36.4 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 10 B G 24 B C 25 B C 27 B U 39 B C 40 B C 41 B
A 42 B G 43 B G 44 B U 45 B
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program