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PDBsum entry 3vu4
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Pore analysis for: 3vu4 calculated with  MOLE 2.0
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PDB id
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3vu4
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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4 pores,
coloured by radius |
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6 pores,
coloured by radius
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6 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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2.50 |
2.76 |
25.6 |
-2.51 |
-0.60 |
34.3 |
83 |
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3 |
6 |
1 |
2 |
1 |
0 |
0 |
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2 |
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1.88 |
1.88 |
35.0 |
-2.22 |
-0.72 |
25.2 |
84 |
5 |
6 |
3 |
1 |
1 |
0 |
0 |
SO4 402 B
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3 |
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1.85 |
1.85 |
48.5 |
-1.97 |
-0.64 |
24.6 |
83 |
4 |
9 |
3 |
2 |
2 |
0 |
0 |
SO4 402 B
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4 |
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1.75 |
1.76 |
84.1 |
-2.49 |
-0.64 |
31.3 |
83 |
12 |
10 |
5 |
3 |
2 |
0 |
0 |
SO4 401 A SO4 402 B
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5 |
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1.70 |
1.70 |
84.9 |
-2.39 |
-0.67 |
28.4 |
81 |
16 |
7 |
8 |
1 |
2 |
0 |
0 |
SO4 401 A SO4 402 B
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6 |
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1.74 |
1.74 |
84.6 |
-2.62 |
-0.68 |
30.1 |
77 |
12 |
7 |
5 |
1 |
2 |
1 |
0 |
SO4 401 A SO4 403 B
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program