PDBsum entry 3vs4 Go to PDB code:  Tunnel analysis for: 3vs4 calculated with MOLE 2.0 PDB id 3vs4 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.37 2.34 23.9 -1.77 -0.24 23.0 87 3 3 3 3 1 0 0   2 1.13 1.92 27.7 -0.86 0.02 19.2 81 3 3 3 5 2 0 0   3 1.38 1.98 33.7 -1.53 -0.14 18.8 87 3 3 3 3 2 0 0   4 1.36 1.96 35.5 -1.66 -0.15 22.1 85 4 4 4 3 2 0 0   5 1.13 1.91 39.4 -1.12 0.01 19.8 80 4 4 4 5 3 0 0   6 1.36 2.26 39.6 -0.63 -0.04 11.5 88 4 4 5 4 2 0 0   7 1.12 1.91 43.4 -0.29 0.08 11.1 84 4 4 5 6 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.