PDBsum entry 3vq1 Go to PDB code:  Pore analysis for: 3vq1 calculated with MOLE 2.0 PDB id 3vq1 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 pores, coloured by radius 10 pores, coloured by radius 10 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.24 1.31 32.0 0.66 0.00 5.2 78 1 1 2 7 2 0 0   2 4.19 4.50 34.4 -2.19 -0.35 30.7 78 9 3 2 1 2 0 0  LP4 300 C LP5 301 C NAG 2 F 3 3.94 5.91 39.6 -0.87 -0.40 15.4 85 3 3 5 6 2 0 0   4 1.26 1.85 45.7 1.10 0.52 10.0 69 3 1 2 10 8 1 0  LP4 300 C LP5 301 C 5 1.52 2.89 76.8 -1.04 0.00 22.2 77 12 4 4 5 5 1 0  LP4 300 D LP5 301 D NAG 2 G 6 1.55 2.90 81.7 -1.17 -0.31 16.0 81 11 4 10 3 4 1 0  LP5 301 C LP4 300 D LP5 301 D 7 1.14 1.18 149.5 -2.17 -0.66 20.4 85 12 8 17 1 4 2 0  LP5 301 C LP4 300 D LP5 301 D 8 1.13 1.17 149.2 -2.18 -0.50 25.0 82 14 9 11 2 6 2 0  LP4 300 D LP5 301 D 9 1.23 2.05 25.1 -2.78 -0.62 36.4 82 7 3 2 1 2 0 0  NAG 1 E NAG 2 E 10 1.14 1.94 33.3 -2.05 -0.36 27.2 85 5 5 6 2 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.