PDBsum entry 3vq1 Go to PDB code:  Tunnel analysis for: 3vq1 calculated with MOLE 2.0 PDB id 3vq1 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.30 1.67 16.4 1.33 0.43 5.8 71 1 0 1 4 2 0 0   2 1.11 1.95 17.4 0.18 0.03 15.1 76 2 1 2 5 0 0 0   3 1.20 1.44 15.3 -0.04 -0.37 12.1 67 0 2 1 4 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.