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PDBsum entry 3v81
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Top Page protein dna_rna ligands Protein-protein interface(s) pores links
Pore analysis for: 3v81 calculated with MOLE 2.0 PDB id
3v81
Pores calculated on whole structure Pores calculated excluding ligands
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29 pores, coloured by radius 25 pores, coloured by radius 25 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.40 2.62 56.1 -0.65 -0.16 15.7 82 7 3 2 5 1 1 0  DC 814 P DG 708 T
2 2.52 2.55 85.9 -1.76 -0.54 23.8 77 9 5 3 2 1 1 0  DC 803 P DT 813 P DC 814 P DG 815 P DG 710 T DC
711 T DC 712 T DC 713 T DG 714 T DA 718 T DG 719
T DG 720 T DG 721 T DA 722 T DC 723 T
3 1.37 1.41 88.6 -1.05 -0.21 12.6 74 7 3 4 4 4 3 0  DG 719 E DG 720 E DG 721 E DA 722 E DC 803 F
4 1.77 2.29 95.6 -1.50 -0.43 22.3 76 9 6 3 3 2 5 0  DC 803 P DG 719 T DG 720 T DG 721 T DA 722 T DC
723 T
5 1.39 1.63 98.7 -1.30 -0.34 15.3 78 8 5 4 5 3 4 0  
6 2.36 2.44 98.9 -1.45 -0.27 20.5 71 10 5 2 7 6 3 1  DA 706 E DG 707 E DG 708 E ATM 822 F
7 2.26 3.70 101.6 -2.23 -0.54 29.1 76 10 6 1 2 1 1 0  DT 813 P DC 814 P DG 815 P DG 710 T DC 711 T DC
712 T DC 713 T DG 714 T
8 1.37 1.43 114.6 -1.29 -0.42 18.2 78 10 8 5 7 4 2 0  DC 803 P DG 719 T DG 720 T DG 721 T DA 722 T DC
723 T
9 2.22 2.46 117.1 -0.95 -0.33 16.9 81 8 7 6 4 2 3 0  
10 1.60 2.13 120.2 -1.88 -0.56 23.6 74 10 8 1 1 4 3 0  DG 707 E DG 708 E DC 709 E DG 710 E DC 814 F DG
815 F
11 1.34 2.34 122.0 -1.90 -0.35 22.2 72 11 6 4 3 5 3 0  DG 707 E DG 708 E DT 813 F DC 814 F DG 815 F
12 1.77 2.29 132.3 -1.01 -0.40 17.0 80 9 8 6 5 2 3 0  
13 1.20 1.37 140.0 -1.61 -0.57 20.8 81 14 7 6 5 1 4 0  DT 813 P DC 814 P DG 815 P DG 710 T DC 711 T DC
712 T DC 713 T
14 1.70 2.31 136.9 -1.09 -0.21 16.6 74 12 7 4 11 7 2 1  DA 706 E DG 707 E DG 708 E DT 813 F DC 814 F DG
815 F ATM 822 F
15 1.60 1.92 135.1 -1.09 -0.34 18.0 76 11 9 1 8 6 2 1  DA 706 E DG 707 E DG 708 E DC 709 E DG 710 E DC
814 F DG 815 F ATM 822 F
16 1.28 1.34 141.5 -1.10 -0.31 14.5 81 12 8 8 8 3 4 0  DC 803 F
17 1.45 1.46 146.4 -1.61 -0.49 21.5 79 16 10 4 7 3 1 0  DT 813 P DC 814 P DG 815 P DG 710 T DC 711 T DC
712 T DC 713 T DG 714 T
18 1.38 1.37 151.0 -1.70 -0.50 21.9 73 11 7 2 3 3 4 0  DG 707 E DG 708 E DG 719 E DG 720 E DG 721 E DA
722 E DC 803 F DT 813 F DC 814 F DG 815 F
19 1.42 1.66 158.3 -1.19 -0.36 17.4 79 11 9 7 8 5 4 0  DC 803 P DG 719 T DG 720 T DG 721 T DA 722 T DC
723 T
20 1.29 1.48 172.1 -0.95 -0.32 16.6 76 11 8 2 12 5 3 1  DA 706 E DG 707 E DG 708 E DG 719 E DG 720 E DG
721 E DA 722 E DC 803 F DT 813 F DC 814 F DG 815
F ATM 822 F
21 1.43 1.41 187.4 -1.37 -0.35 22.0 79 13 9 3 6 4 0 1  DT 813 P DC 814 P DG 815 P DG 816 P MRG 817 P DC
818 P DG 819 P DC 820 P DC 821 P ATM 822 P DA 706
T DG 707 T DG 708 T DC 709 T DG 710 T DC 711 T DC
712 T DC 713 T DG 714 T
22 1.46 1.46 192.1 -1.19 -0.18 20.1 76 12 10 5 8 7 2 1  DC 814 P ATM 822 P DA 706 T DG 707 T DG 708 T
23 1.37 2.96 207.9 -1.65 -0.29 19.8 76 20 8 9 7 7 4 0  DG 710 E DC 711 E DC 712 E DC 713 E DG 714 E DT
813 F DC 814 F DC 803 P DG 719 T DG 720 T DG 721
T DA 722 T DC 723 T
24 2.18 2.62 211.6 -1.87 -0.39 21.2 74 19 6 7 4 6 5 0  DG 707 E DG 708 E DC 709 E DG 710 E DC 711 E DC
712 E DC 713 E DG 714 E DC 814 F DG 815 F DC 803
P DG 719 T DG 720 T DG 721 T DA 722 T DC 723 T
25 1.29 1.28 272.6 -1.40 -0.39 17.7 78 23 9 11 13 7 3 1  DA 706 E DG 707 E DG 708 E DC 709 E DG 710 E DC
711 E DC 712 E DC 713 E DG 714 E DC 814 F DG 815
F ATM 822 F DT 813 P DC 814 P DG 815 P DG 710 T
DC 711 T DC 712 T DC 713 T

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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