PDBsum entry 3tpu Go to PDB code:  Tunnel analysis for: 3tpu calculated with MOLE 2.0 PDB id 3tpu Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 1.35 25.6 -0.83 -0.14 8.8 76 1 1 2 3 3 1 0   2 1.20 1.25 27.8 -0.08 0.42 7.1 68 1 1 1 4 7 0 0   3 1.18 1.24 34.2 0.13 0.64 5.8 65 1 2 0 4 8 0 0   4 1.21 1.21 17.3 -1.87 -0.54 18.4 87 1 1 1 2 1 0 0   5 1.20 1.20 15.1 -0.93 -0.68 12.9 81 0 2 1 1 1 0 0   6 1.21 2.36 15.2 2.35 0.81 1.0 80 0 0 1 2 3 0 0   7 1.16 1.51 22.8 -0.72 -0.15 14.5 71 1 1 0 1 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.