PDBsum entry 3thy Go to PDB code:  Pore analysis for: 3thy calculated with MOLE 2.0 PDB id 3thy Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   20 pores, coloured by radius 18 pores, coloured by radius 18 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 1.46 26.1 -1.07 -0.04 16.5 73 3 2 2 4 2 0 0  DT 40 E 2 4.23 4.63 28.6 -1.07 -0.50 17.0 86 4 2 2 3 0 0 0  DT 40 E 3 1.33 1.34 34.2 -1.80 -0.27 23.8 76 7 2 2 4 2 0 0   4 3.37 3.52 40.0 -0.96 -0.55 10.9 90 2 2 2 3 0 0 0  DC 14 D DC 15 D DG 16 D DC 30 E DG 31 E DT 40 E DT 41 E 5 2.13 3.29 43.8 -1.41 -0.43 16.0 82 3 3 4 5 1 0 0   6 3.38 3.53 45.2 -0.72 -0.42 13.8 87 4 2 3 5 0 0 0  DC 14 D DC 15 D DG 16 D DC 30 E DG 31 E 7 2.12 3.28 48.7 -1.23 -0.39 15.3 86 4 4 5 7 0 0 0   8 1.33 1.48 62.1 -2.02 -0.52 20.2 84 5 5 8 3 3 0 0   9 1.40 3.73 70.1 -3.05 -0.62 35.5 76 10 8 2 0 2 1 0   10 1.28 3.21 75.3 -1.44 -0.25 17.4 82 8 6 5 6 4 3 0   11 2.43 2.86 91.7 -1.64 -0.33 23.2 81 8 7 4 3 2 0 0  DA 11 D DC 36 E DA 37 E DC 39 E DT 40 E 12 1.78 1.78 104.3 -1.35 -0.30 21.6 82 8 7 4 5 2 0 0  DT 9 D DG 10 D DA 11 D DC 36 E DA 37 E DC 39 E 13 1.35 3.15 122.6 -0.71 -0.31 12.9 86 7 5 11 11 4 1 1   14 1.24 2.26 129.1 -1.93 -0.47 20.1 81 14 10 5 4 5 5 0   15 1.91 3.51 131.1 -1.20 -0.44 15.7 88 11 6 13 12 2 0 0  ADP 935 A 16 1.89 3.40 136.2 -1.43 -0.52 16.3 88 10 5 15 12 1 0 0   17 1.50 3.16 139.4 -0.65 -0.31 12.3 85 11 5 12 12 5 1 1   18 1.27 2.42 208.1 -1.72 -0.46 19.5 84 20 14 14 11 6 5 0  ADP 935 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.