PDBsum entry 3thy Go to PDB code:  Tunnel analysis for: 3thy calculated with MOLE 2.0 PDB id 3thy Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.18 1.18 22.0 2.63 0.77 0.9 80 0 0 0 8 3 0 0   2 1.45 1.60 18.2 -1.54 -0.27 13.5 82 2 3 3 1 3 1 0   3 1.22 1.25 20.6 -1.11 -0.27 9.8 83 2 2 3 2 3 1 0   4 1.18 1.32 17.9 0.43 0.02 5.6 78 1 1 3 4 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.