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PDBsum entry 3s15

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Top Page protein dna_rna metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 3s15 calculated with MOLE 2.0 PDB id
3s15
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.21 1.24 176.9 -0.81 -0.29 14.6 85 15 8 11 18 3 3 0  MG 2002 B DC 4 R DG 5 R DA 6 R DA 8 R DG 9 R DG
10 R DA 18 T DT 19 T DC 20 T DC 21 T DA 27 T DT
28 T
2 1.15 1.34 15.1 -0.25 -0.26 11.1 88 5 1 1 4 1 1 0  
3 1.16 1.34 20.7 -0.32 -0.05 10.3 84 4 1 2 4 1 2 0  
4 1.13 1.35 22.0 -2.01 -0.53 23.4 73 3 2 1 2 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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