PDBsum entry 3ram Go to PDB code:  Tunnel analysis for: 3ram calculated with MOLE 2.0 PDB id 3ram Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.08 1.08 38.7 -1.48 -0.59 9.4 87 3 1 7 5 1 0 0  GOL 522 B 2 1.25 1.46 42.8 0.16 -0.01 14.6 81 4 4 0 8 1 1 1  MSE 154 D MSE 365 D MSE 368 D GOL 504 D GOL 511 D 3 1.20 1.19 45.7 -1.62 -0.68 7.8 90 4 1 11 4 1 0 0  GOL 522 B 4 1.18 1.18 46.8 -1.45 -0.56 9.3 88 4 1 10 5 1 0 0  GOL 522 B 5 1.27 1.45 59.4 -0.46 -0.08 15.5 79 5 5 2 10 2 2 1  MSE 154 D MSE 365 D MSE 368 D GOL 504 D GOL 511 D GOL 521 D 6 1.17 1.17 61.2 -0.38 -0.20 14.9 83 6 6 3 10 2 2 1  MSE 154 D MSE 365 D MSE 368 D GOL 504 D GOL 511 D GOL 521 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.