PDBsum entry 3raj Go to PDB code:  Pore analysis for: 3raj calculated with MOLE 2.0 PDB id 3raj Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.38 1.42 26.0 -0.49 -0.24 11.4 85 2 0 1 2 1 1 0   2 1.09 2.54 37.8 0.61 -0.16 3.6 92 2 0 2 6 0 1 0   3 1.30 1.34 48.9 -0.26 0.09 6.1 75 1 0 2 2 2 2 0   4 1.30 1.34 58.6 -0.29 -0.27 7.8 81 2 2 4 3 2 3 0   5 1.52 2.24 28.5 -0.94 -0.38 13.8 78 2 1 2 1 2 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.