PDBsum entry 3raj Go to PDB code:  Tunnel analysis for: 3raj calculated with MOLE 2.0 PDB id 3raj Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.89 2.06 17.6 -0.51 -0.51 5.9 96 0 1 5 3 1 0 0   2 1.99 2.05 17.9 -0.14 -0.13 12.4 86 1 3 3 4 2 0 0   3 1.98 1.98 24.0 -0.10 -0.15 10.1 93 2 2 4 3 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.