PDBsum entry 3qep Go to PDB code:  Pore analysis for: 3qep calculated with MOLE 2.0 PDB id 3qep Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   14 pores, coloured by radius 10 pores, coloured by radius 10 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.69 1.83 37.5 -2.44 -0.59 31.4 83 6 3 3 1 1 0 0   2 1.77 1.76 40.9 -1.64 -0.20 26.0 80 8 4 4 5 2 0 0  TTP 904 A 3 1.79 1.78 57.6 -1.03 -0.18 19.7 84 5 6 6 3 4 0 0   4 2.09 2.09 58.9 -0.94 -0.22 15.6 78 3 3 1 3 2 0 0  DT 112 P DT 113 P DT 1 T DC 2 T DG 3 T DG 5 T DT 6 T 5 1.76 1.77 61.1 -1.87 -0.33 28.8 80 8 6 3 6 3 0 0  TTP 904 A DT 113 P DA 114 P DOC 115 P DT 1 T DC 2 T 6 2.87 3.05 70.2 -0.32 0.04 9.2 79 5 1 3 5 3 0 0  DT 112 P DT 113 P DA 114 P DT 1 T DC 2 T DG 3 T DFT 4 T DG 5 T DT 6 T 7 1.72 1.77 72.7 -1.20 -0.16 21.5 79 6 5 1 7 2 0 0  TTP 904 A DT 112 P DT 113 P DA 114 P DOC 115 P DT 1 T DC 2 T DG 3 T DFT 4 T DG 5 T DT 6 T 8 1.41 1.57 101.9 -0.80 -0.21 11.2 81 6 1 3 2 2 1 0  DG 103 P DC 104 P DT 109 P DG 110 P DC 111 P DT 112 P DC 2 T DG 3 T DG 5 T DT 6 T DA 8 T DA 11 T DG 12 T DT 13 T 9 1.47 1.57 114.7 -1.26 -0.46 17.9 84 7 3 4 2 2 1 0  DG 103 P DC 104 P DT 109 P DG 110 P DC 111 P DT 112 P DT 113 P DT 1 T DC 2 T DG 3 T DT 6 T DA 8 T DA 11 T DG 12 T DT 13 T 10 1.40 1.57 115.5 -0.66 -0.25 10.9 84 8 0 6 4 3 1 0  DG 103 P DC 104 P DT 109 P DG 110 P DC 111 P DT 112 P DT 113 P DA 114 P DT 1 T DG 3 T DFT 4 T DG 5 T DT 6 T DA 8 T DA 11 T DG 12 T DT 13 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.