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PDBsum entry 3q22

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Top Page protein dna_rna ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 3q22 calculated with MOLE 2.0 PDB id
3q22
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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10 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.94 1.94 17.7 -0.28 -0.17 18.7 83 3 2 0 3 0 0 0  DT 3 D
2 1.43 1.44 15.3 -1.43 -0.59 14.2 85 1 2 2 0 1 0 0  
3 1.88 1.88 17.2 -0.92 -0.42 16.3 87 3 1 1 4 0 0 0  
4 1.31 1.32 24.4 -0.40 -0.19 15.7 89 2 2 1 3 0 0 0  
5 1.09 1.39 18.0 1.06 0.34 5.6 79 1 0 2 9 1 1 0  
6 1.10 1.39 18.7 0.85 0.38 5.7 79 1 0 2 9 1 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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