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PDBsum entry 3po3

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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 3po3 calculated with MOLE 2.0 PDB id
3po3
Pores calculated on whole structure Pores calculated excluding ligands

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30 pores, coloured by radius 31 pores, coloured by radius 31 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.92 2.23 27.3 -2.27 -0.51 28.8 76 4 4 1 3 2 0 0  
2 1.35 1.35 34.5 -2.08 -0.50 22.6 80 4 3 3 1 1 3 0  
3 2.16 2.36 35.4 -1.46 -0.33 17.4 79 3 2 4 4 1 1 0  
4 2.30 3.33 44.1 -1.93 -0.26 23.5 76 7 4 3 2 4 1 0  
5 2.01 3.05 60.9 -2.31 -0.45 30.5 79 9 10 1 4 2 2 0  
6 1.67 3.06 61.8 -1.84 -0.41 24.8 82 9 8 3 5 2 2 0  
7 1.84 2.33 65.3 -1.19 0.02 19.2 75 9 4 5 4 7 3 0  
8 2.29 3.44 66.9 -1.83 -0.33 24.1 81 11 8 5 6 2 1 0  
9 1.84 1.98 73.1 -1.59 -0.52 20.6 79 7 8 7 5 4 3 0  
10 2.24 2.28 76.1 -1.95 -0.46 21.6 88 8 3 9 6 0 2 0  DG 2 N DG 3 N DT 4 N DG 10 T
11 1.52 3.12 76.8 -1.67 -0.25 22.8 77 9 4 5 3 4 1 0  
12 3.94 4.05 92.2 -1.84 -0.62 20.1 87 8 4 8 5 0 2 0  DG 2 N DG 3 N DT 4 N DC 7 P DG 10 T DT 17 T DG 18
T
13 1.76 2.03 96.8 -1.67 -0.34 18.1 80 11 10 8 5 8 4 0  DG 10 T
14 1.44 3.04 101.1 -1.68 -0.35 20.5 79 13 6 7 7 3 2 0  
15 2.26 2.28 100.9 -1.85 -0.38 25.6 84 10 5 7 8 1 2 0  DG 2 N DC 7 P DT 17 T DG 18 T
16 1.86 2.10 103.5 -1.27 -0.07 17.3 84 12 7 12 7 6 1 0  
17 1.57 3.08 105.1 -2.03 -0.41 25.4 86 11 5 7 8 1 0 0  DA 6 N DG 10 T
18 1.45 3.11 106.8 -2.14 -0.64 27.5 81 13 12 6 8 1 1 0  DG 7 N DA 14 T DC 15 T DC 16 T DT 17 T
19 1.39 1.42 107.1 -1.68 -0.55 19.0 85 11 5 8 4 3 1 0  DC 7 P DC 10 P DC 11 P DT 17 T DG 18 T
20 1.82 1.83 115.5 -1.75 -0.32 21.4 82 13 5 7 7 4 1 0  DA 6 N DG 10 T
21 1.31 1.57 122.9 -1.29 -0.07 19.5 72 13 11 3 4 9 3 0  
22 1.53 3.10 152.7 -1.68 -0.40 18.9 86 11 8 13 12 2 2 1  
23 1.69 1.70 157.6 -1.61 -0.34 18.8 83 14 7 13 10 5 2 0  
24 1.21 1.34 176.9 -1.38 -0.25 21.6 80 18 14 10 10 6 4 0  DG 2 N DG 3 N
25 1.69 1.82 178.9 -1.73 -0.30 21.3 81 22 12 15 10 10 3 0  DG 2 N DG 3 N
26 1.66 2.09 175.9 -1.75 -0.42 19.3 83 16 13 16 8 6 5 0  DG 10 T
27 1.22 1.42 185.8 -1.75 -0.27 24.8 79 19 13 8 10 5 4 0  
28 2.31 2.31 181.8 -1.68 -0.53 18.8 85 13 12 11 14 1 3 1  DG 7 N DA 14 T DC 15 T DC 16 T DT 17 T
29 1.33 1.34 202.5 -1.59 -0.33 20.2 81 16 14 11 11 5 5 0  
30 2.27 2.28 204.0 -1.66 -0.44 17.8 88 13 9 16 17 1 4 1  DG 2 N DG 3 N DT 4 N DA 5 N DA 6 N
31 1.30 1.43 63.2 -1.34 -0.47 20.8 86 5 4 1 4 1 0 0  PGE 71 L

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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