spacer
spacer

PDBsum entry 3po3

Go to PDB code: 
Top Page protein dna_rna ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 3po3 calculated with MOLE 2.0 PDB id
3po3
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.19 1.39 114.9 -0.91 -0.28 16.2 82 14 10 9 12 5 4 0  
2 1.21 1.38 119.9 -1.18 -0.26 14.2 80 14 5 12 7 8 2 0  
3 1.19 1.37 120.1 -1.08 -0.34 16.9 80 12 7 9 12 5 4 0  
4 1.17 1.38 129.8 -1.17 -0.30 17.9 82 15 8 14 15 5 3 0  
5 1.34 2.62 33.5 -0.26 -0.21 5.5 80 1 1 4 5 3 1 0  
6 1.23 1.24 24.5 -1.69 -0.47 21.4 78 4 2 1 1 2 0 0  
7 1.23 1.23 26.4 -1.31 -0.32 18.7 72 4 2 1 2 3 0 0  
8 1.26 1.26 15.1 -1.28 -0.47 23.1 75 2 1 0 0 2 0 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer