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PDBsum entry 3pml
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Pore analysis for: 3pml calculated with  MOLE 2.0
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PDB id
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3pml
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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15 pores,
coloured by radius |
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15 pores,
coloured by radius
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15 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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3.07 |
3.07 |
40.5 |
-0.34 |
-0.35 |
10.2 |
85 |
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2 |
2 |
2 |
2 |
0 |
3 |
0 |
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DT 7 C DA 8 C DC 9 C DT 10 C DG 11 C DT 7 E DA 8
E DC 9 E DT 10 E DG 11 E DC 1 F
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2 |
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2.47 |
2.47 |
60.1 |
-1.57 |
-0.36 |
23.2 |
84 |
5 |
2 |
2 |
2 |
0 |
2 |
0 |
1GC 702 B DG 6 E DT 7 E DA 8 E DC 9 E DT 10 E DG
11 E DC 1 F DA 2 F DG 3 F DT 4 F DA 5 F DC 6 F
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3 |
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2.86 |
2.86 |
61.7 |
-0.79 |
-0.52 |
12.1 |
81 |
4 |
1 |
2 |
3 |
0 |
3 |
0 |
DT 7 C DG 3 E DC 4 E DG 6 E DT 7 E DA 8 E DC 9 E
DT 10 E DG 11 E DC 1 F DG 4 G
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4 |
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2.54 |
3.48 |
63.6 |
-1.06 |
-0.50 |
13.9 |
84 |
5 |
1 |
2 |
3 |
0 |
2 |
1 |
DG 3 C DC 4 C DG 6 C DT 7 C DG 4 D DT 7 E DA 8 E
DC 9 E DT 10 E DG 11 E DC 1 F
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5 |
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2.87 |
2.87 |
65.2 |
-0.83 |
-0.58 |
10.8 |
83 |
4 |
1 |
2 |
3 |
0 |
2 |
0 |
DT 7 C DA 8 C DC 9 C DT 10 C DG 11 C DG 3 E DC 4
E DG 6 E DT 7 E DA 8 E DG 4 G
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6 |
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2.43 |
2.43 |
73.8 |
-1.53 |
-0.38 |
21.9 |
80 |
9 |
3 |
4 |
3 |
2 |
3 |
0 |
1GC 701 A DC 4 C DT 5 C DG 6 C DT 7 C DA 8 C DT 7
E DA 8 E DC 9 E DT 10 E DG 11 E DC 1 F DA 5 H DC
6 H
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7 |
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2.56 |
3.47 |
74.7 |
-0.86 |
-0.56 |
10.2 |
86 |
5 |
2 |
2 |
3 |
0 |
1 |
1 |
DG 3 C DC 4 C DG 6 C DT 7 C DA 8 C DC 9 C DT 10 C
DG 11 C DG 4 D DT 7 E DA 8 E
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8 |
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2.34 |
2.34 |
75.2 |
-1.33 |
-0.53 |
17.4 |
79 |
7 |
1 |
2 |
3 |
1 |
1 |
0 |
1GC 702 B DG 3 E DC 4 E DG 6 E DT 7 E DT 4 F DA 5
F DC 6 F DG 4 G
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9 |
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2.36 |
2.36 |
75.8 |
-1.32 |
-0.48 |
17.5 |
80 |
8 |
2 |
2 |
2 |
1 |
1 |
0 |
1GC 702 B DT 7 C DA 8 C DC 9 C DT 10 C DG 11 C DG
6 E DT 7 E DA 8 E DT 4 F DA 5 F DC 6 F
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10 |
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2.43 |
2.43 |
81.8 |
-1.68 |
-0.40 |
21.9 |
80 |
12 |
2 |
5 |
5 |
2 |
1 |
1 |
1GC 701 A DG 3 C DC 4 C DT 5 C DG 6 C DT 7 C DG 4
D DA 5 H DC 6 H
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11 |
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2.58 |
3.47 |
82.2 |
-1.19 |
-0.60 |
14.1 |
83 |
6 |
0 |
2 |
4 |
0 |
1 |
1 |
DG 3 C DC 4 C DG 6 C DT 7 C DG 4 D DG 3 E DC 4 E
DG 6 E DT 7 E DG 4 G
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12 |
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2.43 |
2.43 |
84.8 |
-1.61 |
-0.45 |
20.4 |
81 |
10 |
4 |
4 |
3 |
2 |
1 |
0 |
1GC 701 A DC 4 C DT 5 C DG 6 C DT 7 C DA 8 C DC 9
C DT 10 C DG 11 C DT 7 E DA 8 E DA 5 H DC 6 H
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13 |
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2.37 |
2.37 |
92.9 |
-1.69 |
-0.52 |
20.6 |
81 |
10 |
1 |
2 |
3 |
1 |
0 |
1 |
1GC 702 B DG 3 C DC 4 C DG 6 C DT 7 C DG 4 D DG 6
E DT 7 E DT 4 F DA 5 F DC 6 F
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14 |
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2.43 |
2.43 |
93.5 |
-1.68 |
-0.50 |
21.1 |
81 |
12 |
2 |
5 |
4 |
2 |
1 |
0 |
1GC 701 A DC 4 C DT 5 C DG 6 C DT 7 C DG 3 E DC 4
E DG 6 E DT 7 E DG 4 G DA 5 H DC 6 H
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15 |
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2.43 |
2.44 |
104.2 |
-2.24 |
-0.44 |
28.5 |
80 |
16 |
3 |
5 |
3 |
3 |
0 |
0 |
1GC 701 A 1GC 702 B DC 4 C DT 5 C DG 6 C DT 7 C
DG 6 E DT 7 E DT 4 F DA 5 F DC 6 F DA 5 H DC 6 H
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program