PDBsum entry 3nt1

Pore analysis for: 3nt1 calculated with

MOLE 2.0

PDB id

3nt1

Pores calculated on whole structure

Pores calculated excluding ligands

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9 pores, coloured by radius

16 pores, coloured by radius

16 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.59

1.59

25.2

-1.92

-0.71

3.7

70

1

0

4

0

2

2

0

2

1.20

1.73

29.4

-0.71

-0.17

14.5

72

3

2

5

5

3

0

0

NAG 1 D

3

1.52

1.52

38.7

-1.40

-0.51

11.2

77

4

3

6

2

2

1

2

4

1.28

1.28

58.2

0.95

0.13

2.9

75

1

1

5

12

7

1

0

CL 1 B NPS 4 B NAG 1 C

5

1.19

1.26

65.6

-1.20

-0.28

12.8

75

6

3

7

4

4

2

1

6

1.21

1.20

68.8

-1.59

-0.44

16.2

82

5

5

7

3

3

1

0

NAG 1 C

7

1.23

2.94

72.3

0.03

0.00

8.6

73

4

4

6

13

10

1

0

CL 1 A NPS 5 A BOG 6 A

8

1.23

1.72

73.2

-0.01

0.01

8.5

73

5

4

8

10

11

1

0

CL 1 B NPS 4 B

9

1.20

1.29

73.7

-1.39

-0.50

7.6

76

3

2

10

2

3

4

1

10

1.26

1.28

82.7

0.25

-0.02

6.7

79

7

2

9

13

8

1

0

CL 1 A NPS 5 A NAG 1 C

11

1.27

1.71

86.1

-1.52

-0.43

15.9

76

8

4

9

4

6

1

2

NAG 1 C

12

1.99

2.30

86.2

-1.71

-0.24

16.4

79

7

1

4

2

3

1

0

13

1.27

1.28

89.9

-0.29

-0.15

9.8

77

7

5

8

11

10

1

0

CL 1 A NPS 5 A

14

1.61

1.60

98.6

-1.44

-0.42

11.8

78

5

4

6

4

2

2

2

15

2.53

4.49

127.1

-1.74

-0.31

20.0

80

8

2

6

2

4

2

0

BOG 620 A

16

1.18

1.25

149.4

-1.56

-0.42

16.0

79

7

4

8

4

2

4

1

BOG 620 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.