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PDBsum entry 3nt1

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Top Page protein ligands metals Protein-protein interface(s) clefts links
Cleft analysis for: 3nt1 PDB id
3nt1
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 16719.75 2.36 78.44 1 14.74 2 23.15 1 51 34 72 59 41 43 10 NAG 671[A], NAG 672[A], HEM 619[A],
NAG 671[B], NAG 672[B], HEM 
619[B] (128 atoms)
2 7090.03 0.00 74.18 2 15.47 1 16.04 2 16 11 26 28 20 13 2 NPS 5[A], BOG 6[A], BOG 620[A]
(43 atoms)
3 6901.88 0.00 72.32 3 14.13 3 15.90 3 16 10 27 29 19 12 2 NPS 4[B], BOG 3[B] (37 atoms)
4 2310.19 0.00 63.51 5 7.78 6 10.30 5 10 5 15 4 9 4 0  
5 1731.80 0.00 60.95 6 7.72 7 10.52 4 6 3 13 3 4 3 0  
6 1036.12 0.00 57.61 10 8.85 4 7.86 9 4 6 3 3 1 3 1  
7 1345.78 0.00 67.50 4 8.49 5 7.99 8 9 7 6 5 2 8 0  
8 927.70 0.00 60.60 7 6.90 8 8.52 6 4 5 4 5 1 4 1  
9 774.14 0.00 59.77 9 4.64 10 8.08 7 4 4 5 2 3 0 0  
10 764.44 0.00 60.09 8 5.43 9 7.20 10 3 4 3 5 1 4 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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