PDBsum entry 3nif Go to PDB code:  Pore analysis for: 3nif calculated with MOLE 2.0 PDB id 3nif Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.17 2.20 27.2 -0.29 -0.27 10.8 84 0 4 2 2 0 2 0   2 2.25 2.28 66.8 -1.13 -0.10 10.9 74 2 4 7 2 9 1 0  NIF 455 A NIF 455 C NAG 1 G NAG 2 G 3 1.30 1.28 74.8 -1.12 -0.30 16.2 83 5 5 3 6 3 2 0   4 1.31 1.31 99.7 -0.87 0.10 10.5 77 5 6 6 6 11 2 0  NIF 455 A NIF 455 C NAG 1 G NAG 2 G 5 1.27 2.68 110.7 -1.79 -0.34 22.9 81 8 6 6 6 2 2 0  GOL 472 B 6 1.38 2.58 114.0 -1.66 -0.29 17.5 80 6 6 6 6 5 2 0  GOL 472 B NIF 455 C NAG 2 G 7 2.75 2.98 122.0 -1.78 -0.51 19.5 83 8 6 9 3 5 0 0  NIF 455 A 8 1.30 1.28 139.7 -1.73 -0.45 20.6 84 8 9 6 7 3 1 0   9 1.28 1.29 147.8 -1.17 -0.26 13.9 80 6 7 7 8 7 4 0  NIF 455 C 10 1.19 1.32 149.6 -1.38 -0.17 13.4 82 9 6 12 6 9 1 0  NIF 455 C NAG 2 G 11 2.18 2.29 154.1 -1.75 -0.46 18.0 80 9 7 5 2 3 3 0   12 2.24 2.37 156.7 -1.91 -0.54 20.5 86 10 10 7 5 3 0 0   13 2.15 2.16 215.9 -1.33 -0.14 13.9 77 11 9 8 6 11 4 0  NIF 455 A NIF 455 C MG 2001 D NAG 1 G NAG 2 G 14 2.93 2.94 255.9 -1.86 -0.50 20.0 82 14 12 9 7 3 3 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.