PDBsum entry 3nif Go to PDB code:  Tunnel analysis for: 3nif calculated with MOLE 2.0 PDB id 3nif Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 1.27 32.9 0.46 -0.07 5.5 84 1 0 5 6 2 0 0   2 1.21 1.81 33.9 0.89 -0.01 3.0 80 0 1 3 5 3 0 0   3 1.24 1.30 17.7 0.42 0.11 4.9 64 1 1 0 2 1 3 2   4 1.25 1.29 18.9 0.59 0.16 5.7 67 1 1 0 3 1 3 2   5 1.11 1.11 17.1 -2.59 -0.62 23.0 81 1 1 2 1 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.