PDBsum entry 3n8v

Pore analysis for: 3n8v calculated with

MOLE 2.0

PDB id

3n8v

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

9 pores, coloured by radius

13 pores, coloured by radius

13 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.82

2.02

43.2

-1.42

-0.25

15.7

71

4

2

6

2

3

3

2

2

1.53

3.17

47.9

-1.38

0.07

23.9

86

8

1

3

4

2

0

0

BOG 751 A

3

1.59

1.62

59.3

-2.27

-0.53

13.0

77

7

0

7

1

3

2

0

4

1.18

1.18

78.7

0.45

0.22

11.2

83

5

4

3

11

2

1

0

HEM 1801 B NAG 1 G

5

1.23

3.47

85.7

-0.18

-0.06

9.3

77

6

2

8

8

9

1

0

6

1.18

2.50

90.4

-0.25

-0.10

9.1

81

7

2

10

13

9

1

0

GOL 851 B NAG 1 E

7

1.21

1.35

90.5

0.01

-0.03

8.6

79

6

2

7

8

7

1

0

NAG 1 E NAG 1 H

8

2.02

2.21

99.2

-1.77

-0.28

20.1

82

9

1

7

1

5

1

0

BOG 1750 B BOG 1752 B

9

1.20

2.64

105.2

-0.19

0.09

12.3

75

8

2

7

16

11

2

0

BOG 751 A NAG 1 E

10

1.49

1.57

105.1

-1.30

-0.25

15.4

78

7

3

8

1

5

4

2

BOG 1750 B

11

1.23

2.37

110.1

-0.04

0.13

11.8

76

8

2

6

16

9

2

0

BOG 751 A NAG 1 E NAG 1 H

12

1.22

2.99

141.8

-0.26

-0.01

11.9

77

12

5

10

20

9

3

2

GOL 851 B BOG 1751 B BOG 1752 B NAG 1 E NAG 1 H

13

1.22

2.99

159.0

-0.21

-0.01

11.5

78

12

6

11

23

13

2

0

GOL 851 B BOG 1751 B BOG 1752 B NAG 1 E NAG 1 H

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.