PDBsum entry 3n8v Go to PDB code:  Tunnel analysis for: 3n8v calculated with MOLE 2.0 PDB id 3n8v Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.23 3.02 38.7 0.63 0.17 3.2 83 1 0 6 7 6 0 0  GOL 851 B 2 1.22 2.94 42.7 0.65 0.34 9.2 82 3 1 6 7 5 1 0  GOL 851 B BOG 1750 B 3 1.35 1.54 42.8 0.38 0.12 7.7 81 4 1 5 6 4 1 0  NAG 1 H 4 1.22 2.93 43.1 1.72 0.73 2.7 73 1 0 3 14 7 0 0  GOL 851 B BOG 1751 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.