spacer
spacer

PDBsum entry 3mec

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 3mec calculated with MOLE 2.0 PDB id
3mec
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
6 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.52 1.66 26.3 -1.43 -0.55 7.1 83 3 0 4 2 1 1 0  
2 1.57 1.99 27.6 -0.58 -0.26 11.2 87 1 2 1 3 0 1 0  
3 1.80 2.48 44.6 -0.25 0.12 17.9 76 6 3 0 7 3 1 0  65B 561 A
4 1.62 1.60 53.2 -1.04 -0.31 9.2 83 4 2 4 3 1 3 0  
5 1.81 2.94 79.7 -1.72 -0.51 20.3 80 6 6 2 2 3 1 0  
6 1.24 1.29 157.4 -1.41 -0.29 16.5 77 14 7 6 8 5 6 0  
7 1.30 1.72 30.5 -1.07 -0.19 10.2 74 4 1 5 4 1 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer