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PDBsum entry 3lfd
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Transferase PDB id
3lfd
Contents
Protein chain
331 a.a.
Ligands
Z85
BOG
procheck   Generate full PROCHECK analyses

PROCHECK summary for 3lfd

Ramachandran plot

PROCHECK statistics

1. Ramachandran Plot statistics


                                         No. of
                                        residues     %-tage
                                         ------      ------
Most favoured regions      [A,B,L]          255       85.6%*  
Additional allowed regions [a,b,l,p]         42       14.1%          
Generously allowed regions [~a,~b,~l,~p]      1        0.3%          
Disallowed regions         [XX]               0        0.0%          
                                           ----      ------
Non-glycine and non-proline residues        298      100.0%

End-residues (excl. Gly and Pro)              5

Glycine residues                             11
Proline residues                             17
                                           ----
Total number of residues                    331

Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good quality model would be expected to have over 90% in the most favoured regions [A,B,L].

2. G-Factors

                                                Average
Parameter                            Score       Score
---------                            -----       -----
Dihedral angles:-
     Phi-psi distribution            -0.35      
     Chi1-chi2 distribution          -0.53*     
     Chi1 only                       -0.35      
     Chi3 & chi4                      0.46      
     Omega                           -0.45      
                                                  -0.34      
                                                  =====
Main-chain covalent forces:-
     Main-chain bond lengths          0.64      
     Main-chain bond angles           0.51      
                                                   0.56      
                                                  =====

     OVERALL AVERAGE                               0.02      
                                                  =====

G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is. 

Values below -0.5*  - unusual
Values below -1.0** - highly unusual
Important note: The main-chain bond-lengths and bond angles are compared with the Engh & Huber (1991) ideal values derived from small-molecule data. Therefore, structures refined using different restraints may show apparently large deviations from normality.

 

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