PDBsum entry 3krk

Pore analysis for: 3krk calculated with

MOLE 2.0

PDB id

3krk

Pores calculated on whole structure

Pores calculated excluding ligands

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13 pores, coloured by radius

14 pores, coloured by radius

14 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.36

1.76

28.5

-1.45

-0.42

17.7

77

3

4

4

2

2

0

0

NAG 1 F

2

1.63

1.63

29.5

-1.12

-0.44

9.7

73

4

1

3

3

0

2

2

GOL 624 A

3

1.25

1.39

29.8

-1.15

-0.44

10.0

73

1

3

3

2

2

2

1

4

1.19

1.37

33.9

-1.20

-0.27

13.8

84

2

4

2

2

1

1

0

5

1.59

1.59

35.9

-2.00

-0.55

7.2

72

4

0

5

0

3

2

0

6

1.23

1.35

41.9

-1.42

-0.27

12.6

73

4

2

3

2

2

3

0

7

1.43

1.49

46.3

-1.47

-0.33

13.2

77

4

1

6

2

2

1

2

GOL 624 B

8

1.46

1.46

50.0

-1.42

-0.28

10.9

77

6

0

7

3

3

1

2

GOL 624 A

9

1.19

1.26

58.5

0.11

-0.16

6.1

79

2

1

5

9

5

1

0

ACD 700 A

10

1.43

3.05

59.9

-1.61

-0.26

17.2

86

7

2

7

3

3

0

0

11

1.19

1.46

73.8

-1.84

-0.50

11.7

74

5

3

6

1

4

4

0

GOL 619 A

12

1.13

1.25

74.9

-0.02

0.09

7.2

77

4

1

9

11

9

1

0

ACD 700 A

13

1.70

1.94

84.3

-2.16

-0.45

21.1

82

6

3

3

1

2

1

0

14

3.18

3.18

110.3

-1.67

-0.23

21.4

76

5

2

2

2

2

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.