PDBsum entry 3kd5 Go to PDB code:  Pore analysis for: 3kd5 calculated with MOLE 2.0 PDB id 3kd5 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 pores, coloured by radius 9 pores, coloured by radius 9 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.68 2.86 58.4 -1.40 -0.24 13.2 84 5 2 7 4 3 0 0  DT 111 P DA 112 P 2 1.57 2.03 92.4 -2.46 -0.44 32.5 80 12 8 5 4 3 0 0  PPF 914 E DA 113 P 3 1.64 2.04 107.5 -2.21 -0.42 26.9 81 11 8 6 4 4 0 0  PPF 914 E DT 111 P DA 112 P DA 113 P 4 1.38 1.80 107.4 -1.66 -0.41 17.2 78 6 3 1 2 1 1 0  DG 101 P DG 107 P DT 108 P DC 109 P DA 110 P DC 1 T DG 2 T DT 5 T DT 6 T DG 13 T DC 14 T DC 15 T 5 1.46 1.79 121.0 -0.69 -0.14 11.1 79 7 0 4 4 3 1 0  DG 101 P DG 107 P DT 108 P DC 109 P DA 110 P DT 111 P DA 112 P DC 4 T DT 5 T DT 6 T DG 13 T DC 14 T DC 15 T 6 1.28 2.80 123.4 -1.27 -0.19 18.6 78 10 6 4 7 4 1 0  DC 1 T DG 2 T DT 3 T DC 4 T DT 5 T 7 1.29 2.79 141.8 -0.88 -0.04 16.2 79 12 5 8 10 6 1 0  DT 111 P DA 112 P DG 2 T DT 3 T DC 4 T DT 5 T 8 1.37 1.66 180.2 -1.91 -0.36 26.9 78 14 8 3 5 4 1 0  PPF 914 E DG 101 P DG 107 P DT 108 P DC 109 P DA 110 P DT 111 P DA 112 P DA 113 P DC 4 T DT 5 T DT 6 T DG 13 T DC 14 T DC 15 T 9 1.21 2.22 186.7 -0.83 -0.12 16.3 77 10 5 3 8 4 2 0  DG 101 P DG 107 P DT 108 P DC 109 P DA 110 P DG 2 T DT 3 T DT 5 T DT 6 T DG 13 T DC 14 T DC 15 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.