PDBsum entry 3kd5 Go to PDB code:  Tunnel analysis for: 3kd5 calculated with MOLE 2.0 PDB id 3kd5 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.32 1.32 39.1 -1.35 -0.57 14.2 80 5 0 2 0 1 1 0  DG 107 P DT 108 P DC 109 P DA 110 P DT 111 P DT 8 T DG 9 T DA 10 T DC 11 T DA 12 T 2 1.32 1.32 43.4 -1.37 -0.65 15.7 85 4 0 2 0 0 1 0  DT 106 P DG 107 P DT 108 P DC 109 P DA 110 P DT 111 P DT 8 T DG 9 T DA 10 T DC 11 T DA 12 T DG 13 T DC 14 T DC 15 T 3 1.33 1.33 45.8 -1.40 -0.70 17.5 84 5 2 2 1 0 0 0  DG 101 P DC 109 P DA 110 P DT 111 P DT 8 T DG 9 T DA 10 T DC 11 T DA 12 T DG 13 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.