PDBsum entry 3k5a Go to PDB code:  Pore analysis for: 3k5a calculated with MOLE 2.0 PDB id 3k5a Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.13 1.87 26.1 0.80 0.23 11.7 87 2 1 2 6 1 0 0  DC 804 T 2 1.90 2.05 39.8 -1.58 -0.57 14.6 85 6 1 3 1 1 1 0  DC 804 T 3 1.98 2.12 49.4 -1.63 -0.32 27.3 80 9 6 2 3 2 1 0  DT 802 T DA 803 T 4 1.99 2.09 58.2 -1.74 -0.41 24.1 81 8 6 4 2 2 1 0  DT 802 T DA 803 T 5 1.41 1.41 38.4 -2.21 -0.49 15.5 75 3 0 3 0 1 2 0  DG 903 P DT 906 P DA 907 P DT 811 T DA 812 T DG 813 T DG 814 T DC 815 T DA 816 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.