PDBsum entry 3k5a Go to PDB code:  Tunnel analysis for: 3k5a calculated with MOLE 2.0 PDB id 3k5a Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.41 1.41 40.7 -2.13 -0.50 17.2 71 4 1 1 0 1 2 0  DT 906 P DA 907 P DG 908 P DG 910 P DA 912 P DC 808 T DG 809 T DC 810 T DT 811 T DA 812 T DG 813 T DG 814 T DC 815 T 2 1.39 1.39 41.2 -2.30 -0.36 23.8 73 6 1 2 0 2 0 0  DG 903 P DG 910 P DA 912 P DC 808 T DG 809 T DC 810 T DT 811 T DA 812 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.