PDBsum entry 3it8

Tunnel analysis for: 3it8 calculated with

MOLE 2.0

PDB id

3it8

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

8 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.67

1.84

15.0

-0.75

0.16

2.1

65

0

0

1

1

5

1

0

2

1.54

1.72

21.9

-1.35

-0.28

14.1

76

2

1

3

2

3

0

0

3

1.32

1.71

40.2

-0.58

-0.20

11.1

76

4

2

4

5

3

1

0

4

1.70

1.70

19.4

-0.56

-0.37

11.5

86

1

2

2

1

1

0

1

5

1.42

1.54

23.6

-0.43

-0.28

16.5

79

2

2

2

4

1

1

1

6

1.69

1.70

27.4

-0.76

-0.38

14.1

81

2

3

2

1

2

0

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.