 |
PDBsum entry 3idy
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Immune system
|
PDB id
|
|
|
|
3idy
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Contents |
 |
|
|
|
|
|
|
|
|
|
|
|
306 a.a.
|
|
|
|
|
|
|
|
|
|
|
229 a.a.
|
|
|
|
|
|
|
|
|
|
|
214 a.a.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Generate full PROCHECK analyses
|
PROCHECK summary for 3idy
Ramachandran plot
PROCHECK statistics
1. Ramachandran Plot statistics
No. of
residues %-tage
------ ------
Most favoured regions [A,B,L] 1013 78.6%**
Additional allowed regions [a,b,l,p] 255 19.8%
Generously allowed regions [~a,~b,~l,~p] 11 0.9%
Disallowed regions [XX] 10 0.8%*
---- ------
Non-glycine and non-proline residues 1289 100.0%
End-residues (excl. Gly and Pro) 20
Glycine residues 114
Proline residues 72
----
Total number of residues 1495
Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good
quality model would be expected to have over 90% in the most favoured regions [A,B,L].
2. G-Factors
Average
Parameter Score Score
--------- ----- -----
Dihedral angles:-
Phi-psi distribution -0.83*
Chi1-chi2 distribution -0.35
Chi1 only -0.20
Chi3 & chi4 0.44
Omega -0.17
-0.35
=====
Main-chain covalent forces:-
Main-chain bond lengths 0.69
Main-chain bond angles 0.61
0.64
=====
OVERALL AVERAGE 0.04
=====
G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is.
Values below -0.5* - unusual
Values below -1.0** - highly unusual
Important note: The main-chain
bond-lengths and bond angles are compared with
the Engh & Huber (1991) ideal values derived
from small-molecule data. Therefore, structures
refined using different restraints may show
apparently large deviations from normality.
|
|
|
