PDBsum entry 3idy Go to PDB code:  Pore analysis for: 3idy calculated with MOLE 2.0 PDB id 3idy Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   17 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.92 3.09 25.4 -1.27 -0.60 9.9 74 1 1 0 0 0 4 0   2 3.64 3.64 26.1 -1.15 -0.56 12.9 82 2 1 1 1 0 4 0   3 1.68 3.77 32.3 -0.75 -0.01 14.8 77 3 2 2 4 3 0 2   4 1.55 1.55 32.5 -0.84 -0.45 9.4 71 1 1 0 2 0 4 0   5 2.29 2.29 38.7 -2.09 -0.77 21.2 95 3 3 6 0 0 1 0   6 1.77 1.77 38.9 -0.07 -0.07 7.3 85 3 1 4 5 1 1 1  NAG 762 G NAG 948 G 7 1.55 1.55 39.1 -1.36 -0.50 12.7 79 3 0 2 2 0 3 0   8 1.78 1.78 42.4 -0.49 0.18 11.4 80 2 3 4 5 5 1 0   9 3.69 3.69 42.6 -1.62 -0.65 16.7 82 4 2 2 2 0 3 0   10 1.73 3.75 43.8 -0.56 0.09 13.6 82 4 3 5 4 3 1 0  NAG 762 G NAG 948 G 11 2.94 3.10 47.8 -2.01 -0.68 18.6 82 5 1 3 1 0 3 0   12 2.51 2.51 51.2 -1.41 -0.51 17.2 88 5 5 5 2 1 1 0   13 1.96 3.21 79.1 -1.65 -0.38 20.6 88 6 9 9 5 4 0 0   14 1.74 1.79 97.3 -1.37 -0.36 19.9 91 9 9 11 6 1 1 0  NAG 762 A NAG 948 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.