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PDBsum entry 3gpu

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Top Page protein dna_rna metals pores links
Pore analysis for: 3gpu calculated with MOLE 2.0 PDB id
3gpu
Pores calculated on whole structure Pores calculated excluding ligands

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1 pore, coloured by radius 1 pore, coloured by radius 1 pore, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.18 2.18 41.7 -2.44 -0.52 29.5 82 3 3 0 1 1 0 0  DT 4 B DA 5 B DG 6 B DC 8 B DG 12 B DA 13 B DC 7
C 8OG 8 C DA 9 C DT 11 C DC 12 C DT 13 C DA 14 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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