PDBsum entry 3gpu Go to PDB code:  Tunnel analysis for: 3gpu calculated with MOLE 2.0 PDB id 3gpu Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 1.28 25.4 -1.09 -0.66 13.1 73 2 0 0 1 0 0 0  DA 5 B DG 6 B DA 9 C DG 10 C DT 11 C 2 1.29 1.29 29.9 -1.13 -0.67 13.3 73 2 0 0 1 0 0 0  DA 5 B DG 6 B DA 7 B DC 8 B DC 6 C DC 7 C DA 9 C DG 10 C DT 11 C 3 1.28 1.28 32.6 -1.44 -0.68 18.7 81 2 2 0 1 0 0 0  DG 3 B DT 4 B DA 5 B DA 9 C DG 10 C DT 11 C DC 12 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.