 |
PDBsum entry 3gdx
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 3gdx calculated with  MOLE 2.0
|
PDB id
|
|
|
|
3gdx
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
5 tunnels,
coloured by tunnel radius |
|
6 tunnels,
coloured by
tunnel radius
|
6 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.37 |
1.41 |
27.8 |
-2.48 |
-0.58 |
24.1 |
83 |
|
2 |
5 |
2 |
0 |
2 |
0 |
0 |
|
4BD 346 A MG 347 A DC 10 P DA 6 T
|
 |
|
2 |
 |
1.36 |
1.40 |
31.5 |
-1.05 |
0.33 |
18.1 |
78 |
3 |
1 |
1 |
1 |
2 |
0 |
0 |
4BD 346 A DT 6 P DG 7 P DC 8 P DG 9 P DC 10 P DA
6 T
|
|
3 |
 |
1.36 |
1.41 |
32.9 |
-2.41 |
-0.65 |
25.9 |
88 |
3 |
4 |
2 |
1 |
1 |
0 |
0 |
4BD 346 A MG 347 A DC 10 P DA 6 T
|
|
4 |
 |
1.36 |
1.41 |
37.1 |
-1.29 |
0.03 |
14.8 |
80 |
3 |
1 |
3 |
1 |
2 |
1 |
0 |
4BD 346 A DG 7 P DC 8 P DG 9 P DC 10 P DA 6 T
|
|
5 |
 |
1.36 |
1.41 |
44.4 |
-2.16 |
-0.34 |
22.6 |
79 |
5 |
2 |
2 |
1 |
2 |
1 |
0 |
4BD 346 A DC 3 D DG 4 D DC 10 P DA 4 T DC 5 T DA
6 T
|
 |
6 |
 |
1.15 |
3.26 |
16.8 |
-0.69 |
-0.44 |
7.6 |
83 |
1 |
2 |
2 |
1 |
0 |
1 |
1 |
CL 352 A
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program