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PDBsum entry 3gdx
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Pore analysis for: 3gdx calculated with  MOLE 2.0
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PDB id
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3gdx
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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2 pores,
coloured by radius |
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4 pores,
coloured by radius
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4 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.80 |
1.80 |
34.7 |
-1.97 |
-0.67 |
20.3 |
80 |
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2 |
1 |
1 |
0 |
0 |
1 |
0 |
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NA 350 A DC 3 D DG 4 D DA 4 T DC 5 T DA 6 T DG 7
T DC 8 T
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2 |
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2.80 |
2.80 |
36.3 |
-1.34 |
-0.78 |
15.8 |
74 |
2 |
1 |
0 |
0 |
0 |
1 |
0 |
NA 350 A DC 3 D DG 4 D DG 5 D DA 4 T DC 5 T
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3 |
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2.29 |
2.37 |
38.7 |
-2.83 |
-0.46 |
29.1 |
87 |
5 |
4 |
3 |
1 |
1 |
0 |
0 |
4BD 346 A DT 6 P DC 8 P DG 9 P DC 10 P DC 5 T DG
7 T DC 8 T
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4 |
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1.55 |
1.55 |
63.4 |
-0.84 |
-0.52 |
10.5 |
94 |
4 |
0 |
3 |
2 |
0 |
0 |
0 |
DT 6 P DG 7 P DC 5 T DG 7 T DC 8 T DA 11 T DT 12
T DC 13 T DA 14 T DG 15 T
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program